Demonstration on data curation and creation of pre-reasoned datasets in the OpenRiskNet framework

Webinar (organized by OpenRiskNet)
18 Mar 2019

Activity details

Monday, 18 March 2019, 16:00 CET

Presenters:  Noffisat Oki (Edelweiss Connect GmbH, Switzerland), Danyel Jennen (Department of Toxicogenomics, Maastricht University, The Netherlands), Marc Jacobs (Fraunhofer Institute, Germany) and Tim Dudgeon (Informatics Matters Ltd, UK).


In the process of utilising the analysis tools available in the OpenRiskNet e-infrastructure, data needs to be accessed from different sources and various formats.

In this webinar we will use examples to introduce attendees to the OpenRiskNet data handling and curation process. This will include methods for data access, upload, and extraction for further downstream analysis.

Some specific examples we will be exploring include:

  • A workflow using data extraction from the EdelweissData Explorer and text mining capability for data extraction from a public databases;

  • Demonstration of extraction of data from a public database for a specific endpoint (e.g. drug induced liver injury) and combine with other data (e.g. omics data) to get a better grouping for target prediction.

Registration: https://attendee.gotowebinar.com/register/1969650133692000781 

Organisations involved

Edelweiss Connect GmbH (EwC)
Fraunhofer Gesellschaft zur Förderung der Angewandten Forschung e.V. (Fraunhofer)
Informatics Matters Limited (IM)
Universiteit Maastricht (UM)

Resources & Training materials

Webinar recording
Demonstration on data curation and creation of pre-reasoned datasets in the OpenRiskNet framework
Noffisat Oki (Edelweiss Connect GmbH, Switzerland), Danyel Jennen (Department of Toxicogenomics, Maastricht University, The Netherlands), Marc Jacobs (Fraunhofer Institute, Germany) and Tim Dudgeon (Informatics Matters Ltd, UK)
26 Mar 2019

Publisher: OpenRiskNet
Target audience: Risk assessors, Researchers, Students, Data managers, Data owners, Data modellers, Bioinformaticians, Data providers
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: EwC, Fraunhofer, IM, UM
Webinar recording
Presentation
Demonstration on data curation
Noffisat Oki (Edelweiss Connect GmbH, Switzerland), Danyel Jennen (Maastricht University, The Netherlands), Marc Jacobs (Fraunhofer Institute, Germany), Tim Dudgeon (Informatics Matters Ltd, UK)
18 Mar 2019
Additional materials:
Slides

Publisher: OpenRiskNet
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: EwC, Fraunhofer, IM, UM
Presentation

Links and additional materials