Peer-reviewed publications

  • Boudellioua I, Mahamad Razali RB, Kulmanov M, Hashish Y, Bajic VB, Goncalves-Serra E, Schoenmakers N, Gkoutos GV, Schofield PN, Hoehndorf R, Semantic prioritization of novel causative genomic variants, PLoS Comput Biol. 2017, 13(4):e1005500, April 2017
    doi: 10.1371/journal.pcbi.1005500


  • Integration and interoperability, Conference Session at OpenTox Euro, Chaired by Chris Evelo, November 2017
    Session details
  • OpenRiskNet Training & Hackathon Session at OpenTox Euro, November 2017
    Session details
  • Data-intensive applications on cloud computing resources: Applications in life sciences, Ola Spjuth, 2nd international de.NBI symposium, October 2017
  • Data-intensive bioinformatics on HPC and Cloud, Ola Spjuth, Big Data Training School for Life Sciences, September 2017
  • Nextflow for chemistry - crossing the divide, Tim Dudgeon, Nextflow workshop, September 2017
  • Towards Semantic Interoperability of Publicly Available Data, Thomas Exner, OpenTox USA, July 2017
    doi: 10.5281/zenodo.831444


  • Exner T, Dokler J, Bachler D, Farcal L, Evelo C, Willighagen E, Jacobs M, Doganis P, Sarimveis H, Lynch I, Kramer S, Notredame C, Jennen D, Gkoutos G, Spjuth S, Jennings P, Dudgeon T, Bois F, Hardy B, OpenRiskNet - an open e-infrastructure to support data sharing, knowledge integration and in silico analysis and modelling in risk assessment, SOT 2018 (Society of Toxicology 57th Annual Meeting and ToxExpo), March 2018
    doi: 10.5281/zenodo.1199287
  • Doganis P, Tsiliki G, Chomenidis C, Valsamis A, Anagnostopoulou E, Sarimveis H, Jaqpot: an open source web platform for modelling and model publishing integrated into a safety assessment e-infrastructure, Open Science FAIR, F1000Research 2017, 6:1865, October 2017
    doi: 10.7490/f1000research.1114990.1
  • Martens M, Evelo C, Willighagen E, The future of regulatory toxicity assessment: Adverse Outcome Pathways, ByteMAL (Bioinformatics for Young inTernational researchers Expo: Maastricht-Aachen-Liège), June 2017
    doi: 10.6084/m9.figshare.5331517.v1

Public communication

  • The OpenRiskNet Approach towards a Semantic Interoperability Layer - Part One: Problem Definition for Datasets, January 2018
    Blog post
  • OpenRiskNet reveals concepts of harmonised APIs and semantic interoperability, provides first training units, and launches Associate Partner Program, December 2017
    Press release
  • OpenRiskNet case studies to support data and tools integration from NanoSafety Cluster, Lucian Farcal, EU NanoSafety Cluster, November 2017
    Newsletter Issue 10 (pg. 7)
  • Horizon 2020 Research Success Story - A global harmonized basis for testing chemical safety, Barry Hardy, Euresearch, August 2017
    PDF | Video
  • Introduction to OpenRiskNet, Lucian Farcal, EU NanoSafety Cluster, April 2017
    Newsletter Issue 9 (pg. 15)
  • OpenRiskNet Kicked off, Thomas Exner, January 2017
    Blog post