Resources & Training
This page contains resources and training materials to support OpenRiskNet users in getting familiar with the services and tools available in the e-infrastructure. On top of tutorials and video demonstrations, you will also find information on our publications (e.g. peer-review articles, presentations, posters) that may help you further in learning about OpenRiskNet concepts and implementations.
Connecting Adverse Outcome Pathways, knowledge and data with AOPLink workflows
16 Jul 2019
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Related services:
BridgeDb identifier mapping service
AOP-Wiki SPARQL Endpoint
ToxTargetLinks
The Adverse Outcome Pathway Database (AOP-DB)
BridgeDb identifier mapping service
AOP-Wiki SPARQL Endpoint
ToxTargetLinks
The Adverse Outcome Pathway Database (AOP-DB)
Target audience: Risk assessors, Researchers, Students, Nanosafety community, Regulators, Bioinformaticians
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: UM
Deploying Applications to an OpenRiskNet Virtual Environment
25 Jun 2019
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Related services:
Lazar Toxicity Predictions
Lazar Toxicity Predictions
Target audience: Developers, Software developers
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: IM
Demonstration on OpenRiskNet approach on modelling for prediction or read across (ModelRX case study)
25 Jun 2019
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Related services:
Lazar Toxicity Predictions
Lazar Toxicity Predictions
Target audience: Risk assessors, Researchers, Data modellers, Bioinformaticians
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: NTUA
Use Nextflow for toxicogenomics-based prediction
3 Jun 2019
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Target audience: Researchers, Developers, Data modellers, Bioinformaticians, Software developers
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: CRG
How to describe OpenRiskNet services and their functionality by semantic annotation
15 May 2019
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Related services:
Lazar Toxicity Predictions
Lazar Toxicity Predictions
Publisher: OpenRiskNet
Target audience: Developers, Software developers
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: EwC
AOP-DB: The Adverse Outcome Pathway Database
16 Apr 2019
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Target audience: Risk assessors, Researchers, Students, Developers, OpenRiskNet stakeholders, Bioinformaticians
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: EwC, UM
Identification and linking of data related to AOPWiki
27 Mar 2019
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Publisher: OpenRiskNet
Target audience: Risk assessors, Researchers, Students, Data modellers, Bioinformaticians
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: EwC, UM
Demonstration on data curation and creation of pre-reasoned datasets in the OpenRiskNet framework
26 Mar 2019
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Related services:
EdelweissData serving ToxCast, ToxRefDB and TG-GATEs data
EdelweissData serving ToxCast, ToxRefDB and TG-GATEs data
Publisher: OpenRiskNet
Target audience: Risk assessors, Researchers, Students, Data managers, Data owners, Data modellers, Bioinformaticians, Data providers
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: EwC, UM, Fraunhofer, IM
Learn how to deploy the OpenRiskNet virtual research environment
26 Feb 2019
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Target audience: Developers, Software developers
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: IM
OpenriskNet webinar: demonstration on services (Nano WG - Part 2)
9 Nov 2018
→ Video
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Publisher: OpenRiskNet
Target audience: Risk assessors, Researchers, Nanosafety community, OpenRiskNet stakeholders, Data modellers, Bioinformaticians, Software developers
Organisations involved: EwC, UU, IM
OpenRiskNet webinar: introduction, case studies and demo (Nano WG - Part 1)
9 Nov 2018
→ Video
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Publisher: OpenRiskNet
Target audience: Risk assessors, Researchers, Students, Developers, Data modellers, Software developers, Nanosafety community
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: EwC, NTUA, UU, IM
OpenRiskNet case studies and the implementation challenge explained
6 Nov 2018
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Abstract:
Case studies are used to test and evaluate the solutions provided by OpenRiskNet to the predictive toxicology and risk assessment community especially regarding the usability of the developed APIs and the interoperability layer. Associated services are demonstrated. Within the implementation challenge, external tools, especially in areas of risk assessment not completely covered by the OpenRiskNet consortium are selected for prioritized integration partial financially and strongly technically supported by researchers of OpenRiskNet partners.
Case studies are used to test and evaluate the solutions provided by OpenRiskNet to the predictive toxicology and risk assessment community especially regarding the usability of the developed APIs and the interoperability layer. Associated services are demonstrated. Within the implementation challenge, external tools, especially in areas of risk assessment not completely covered by the OpenRiskNet consortium are selected for prioritized integration partial financially and strongly technically supported by researchers of OpenRiskNet partners.
Publisher: OpenRiskNet
Target audience: Risk assessors, Researchers, Students, OpenRiskNet stakeholders, Data modellers, Bioinformaticians
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: EwC, NTUA, UU, IM
Introduction to OpenRiskNet e-infrastructure
1 Nov 2018
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Abstract:
The main concept of the OpenRiskNet infrastructure are virtual research environments (VRE) integrating data, analysis, modelling and simulation services for all areas of risk assessment, which can be deployed to workstations as well as public and in-house cloud infrastructures.
The main concept of the OpenRiskNet infrastructure are virtual research environments (VRE) integrating data, analysis, modelling and simulation services for all areas of risk assessment, which can be deployed to workstations as well as public and in-house cloud infrastructures.
Target audience: Developers, OpenRiskNet stakeholders
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: IM
Introduction to OpenRiskNet project
31 Oct 2018
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Abstract:
OpenRiskNet is a 3 year project funded by the European Commission within Horizon2020 EINFRA-22-2016 Programme (Grant Agreement 731075). Full project name: Open e-Infrastructure to Support Data Sharing, Knowledge Integration and in silico Analysis and Modelling in Predictive Toxicology and Risk Assessment. The main objective is to develop an open e-Infrastructure providing resources and services to a variety of communities requiring risk assessment, including chemicals, cosmetic ingredients, therapeutic agents and nanomaterials. OpenRiskNet is working with a network of partners, organized within an Associated Partners Programme.
OpenRiskNet is a 3 year project funded by the European Commission within Horizon2020 EINFRA-22-2016 Programme (Grant Agreement 731075). Full project name: Open e-Infrastructure to Support Data Sharing, Knowledge Integration and in silico Analysis and Modelling in Predictive Toxicology and Risk Assessment. The main objective is to develop an open e-Infrastructure providing resources and services to a variety of communities requiring risk assessment, including chemicals, cosmetic ingredients, therapeutic agents and nanomaterials. OpenRiskNet is working with a network of partners, organized within an Associated Partners Programme.
Publisher: OpenRiskNet
Target audience: General public, OpenRiskNet stakeholders
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: EwC