Resources & Training

This page contains resources and training materials to support OpenRiskNet users in getting familiar with the services and tools available in the e-infrastructure. On top of tutorials and video demonstrations, you will also find information on our publications (e.g. peer-review articles, presentations, posters) that may help you further in learning about OpenRiskNet concepts and implementations.

Webinar recording
Connecting Adverse Outcome Pathways, knowledge and data with AOPLink workflows
Marvin Martens (Department of Bioinformatics, Maastricht University, The Netherlands)
16 Jul 2019

Target audience: Risk assessors, Researchers, Students, Nanosafety community, Regulators, Bioinformaticians
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: UM
Webinar recording
Webinar recording
Demonstration on OpenRiskNet approach on modelling for prediction or read across (ModelRX case study)
Philip Doganis and Haralambos Sarimveis (National Technical University of Athens, Greece)
25 Jun 2019
Related services:
Lazar Toxicity Predictions

Target audience: Risk assessors, Researchers, Data modellers, Bioinformaticians
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: NTUA
Webinar recording
Webinar recording
Deploying Applications to an OpenRiskNet Virtual Environment
Tim Dudgeon and Alan Christie (Informatics Matters Ltd, UK)
25 Jun 2019
Related services:
Lazar Toxicity Predictions

Target audience: Developers, Software developers
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: IM
Webinar recording
Webinar recording
Use Nextflow for toxicogenomics-based prediction
Evan Floden (Centre for Genomic Regulation)
3 Jun 2019

Target audience: Researchers, Developers, Data modellers, Bioinformaticians, Software developers
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: CRG
Webinar recording
Webinar recording
How to describe OpenRiskNet services and their functionality by semantic annotation
Thomas Exner (Edelweiss Connect GmbH, Switzerland)
15 May 2019
Related services:
Lazar Toxicity Predictions

Publisher: OpenRiskNet
Target audience: Developers, Software developers
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: EwC
Webinar recording
Webinar recording
AOP-DB: The Adverse Outcome Pathway Database
Holly Mortensen, Ph.D. (US EPA), Phillip Langley (ORAU-SSC) and Trevor Levey (ORAU-SSC)
16 Apr 2019

Target audience: Risk assessors, Researchers, Students, Developers, OpenRiskNet stakeholders, Bioinformaticians
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: EwC, UM
Webinar recording
Webinar recording
Identification and linking of data related to AOPWiki
Marvin Martens and Egon Willighagen (Department of Bioinformatics, Maastricht University, The Netherlands), Thomas Exner (Edelweiss Connect GmbH, Switzerland)
27 Mar 2019

Publisher: OpenRiskNet
Target audience: Risk assessors, Researchers, Students, Data modellers, Bioinformaticians
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: EwC, UM
Webinar recording
Webinar recording
Demonstration on data curation and creation of pre-reasoned datasets in the OpenRiskNet framework
Noffisat Oki (Edelweiss Connect GmbH, Switzerland), Danyel Jennen (Department of Toxicogenomics, Maastricht University, The Netherlands), Marc Jacobs (Fraunhofer Institute, Germany) and Tim Dudgeon (Informatics Matters Ltd, UK)
26 Mar 2019

Publisher: OpenRiskNet
Target audience: Risk assessors, Researchers, Students, Data managers, Data owners, Data modellers, Bioinformaticians, Data providers
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: EwC, UM, Fraunhofer, IM
Webinar recording
Webinar recording
Learn how to deploy the OpenRiskNet virtual research environment
Alan Christie and Tim Dudgeon (Informatics Matters Ltd, UK)
26 Feb 2019

Target audience: Developers, Software developers
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: IM
Webinar recording
Webinar recording
OpenriskNet webinar: demonstration on services (Nano WG - Part 2)
9 Nov 2018

Publisher: OpenRiskNet
Target audience: Risk assessors, Researchers, Nanosafety community, OpenRiskNet stakeholders, Data modellers, Bioinformaticians, Software developers
Organisations involved: EwC, UU, IM
Webinar recording
Webinar recording
OpenRiskNet webinar: introduction, case studies and demo (Nano WG - Part 1)
9 Nov 2018

Publisher: OpenRiskNet
Target audience: Risk assessors, Researchers, Students, Developers, Data modellers, Software developers, Nanosafety community
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: EwC, NTUA, UU, IM
Webinar recording
Webinar recording
OpenRiskNet case studies and the implementation challenge explained
6 Nov 2018
Abstract:
Case studies are used to test and evaluate the solutions provided by OpenRiskNet to the predictive toxicology and risk assessment community especially regarding the usability of the developed APIs and the interoperability layer. Associated services are demonstrated. Within the implementation challenge, external tools, especially in areas of risk assessment not completely covered by the OpenRiskNet consortium are selected for prioritized integration partial financially and strongly technically supported by researchers of OpenRiskNet partners.

Publisher: OpenRiskNet
Target audience: Risk assessors, Researchers, Students, OpenRiskNet stakeholders, Data modellers, Bioinformaticians
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: EwC, NTUA, UU, IM
Webinar recording
Webinar recording
Introduction to OpenRiskNet e-infrastructure
1 Nov 2018
Abstract:
The main concept of the OpenRiskNet infrastructure are virtual research environments (VRE) integrating data, analysis, modelling and simulation services for all areas of risk assessment, which can be deployed to workstations as well as public and in-house cloud infrastructures.

Target audience: Developers, OpenRiskNet stakeholders
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: IM
Webinar recording
Webinar recording
Introduction to OpenRiskNet project
31 Oct 2018
Abstract:
OpenRiskNet is a 3 year project funded by the European Commission within Horizon2020 EINFRA-22-2016 Programme (Grant Agreement 731075). Full project name: Open e-Infrastructure to Support Data Sharing, Knowledge Integration and in silico Analysis and Modelling in Predictive Toxicology and Risk Assessment. The main objective is to develop an open e-Infrastructure providing resources and services to a variety of communities requiring risk assessment, including chemicals, cosmetic ingredients, therapeutic agents and nanomaterials. OpenRiskNet is working with a network of partners, organized within an Associated Partners Programme.

Publisher: OpenRiskNet
Target audience: General public, OpenRiskNet stakeholders
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: EwC
Webinar recording