Resources & Training

This page contains resources and training materials to support OpenRiskNet users in getting familiar with the services and tools available in the e-infrastructure. On top of tutorials and video demonstrations, you will also find information on our publications (e.g. peer-review articles, presentations, posters) that may help you further in learning about OpenRiskNet concepts and implementations.

Presentation
WP3 Training, Support, Dissemination
13 Dec 2018
Additional materials:
WP3 presentation

Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: CRG, DC, Fraunhofer, IM, INERIS, JGU, NTUA, UM, UU, UoB, VU
Presentation
Presentation
WP4 Service Integration
13 Dec 2018
Additional materials:
WP4 presentation

Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: CRG, DC, Fraunhofer, IM, INERIS, JGU, NTUA, UM, UU, UoB, VU
Presentation
Presentation
WP1 Requirement Analysis, Outreach and Case Studies
13 Dec 2018
Additional materials:
WP1 presentation

Target audience: OpenRiskNet stakeholders
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: CRG, DC, Fraunhofer, IM, INERIS, JGU, NTUA, UM, UU, UoB, VU
Presentation
Presentation
WP2 Interoperability, Deployment and Security
13 Dec 2018
Additional materials:
WP2 presentation

Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: CRG, DC, Fraunhofer, IM, INERIS, JGU, NTUA, UM, UU, UoB, VU
Presentation
Presentation
Implementation Challenge and Associated Partner Programme
Thomas Exner
2 Nov 2018

Target audience: OpenRiskNet stakeholders
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: DC
Presentation
Presentation
Introduction to OpenRiskNet
Thomas Exner
2 Nov 2018
Additional materials:
OpenRiskNet_Introduction.pdf

Target audience: OpenRiskNet stakeholders
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: DC
Presentation
Presentation
Introduction to OpenRiskNet e-infrastructure
Tim Dudgeon
2 Nov 2018

Target audience: Developers, OpenRiskNet stakeholders
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: IM
Presentation
Presentation
OpenRiskNet Case Studies
Thomas Exner
2 Nov 2018
Abstract:
Case studies are used to test and evaluate the solutions provided by OpenRiskNet to the predictive toxicology and risk assessment community especially regarding the usability of the developed APIs and the interoperability layer.
Additional materials:
OpenRiskNet_Case_Studies.pdf

Target audience: Risk assessors, OpenRiskNet stakeholders
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: CRG, DC, Fraunhofer, IM, INERIS, JGU, NTUA, UM, UU, UoB, VU
Presentation
Presentation
Big Data in Toxicogenomics: Towards FAIR predictions
Danyel Jennen
26 Jul 2018

Target audience: Risk assessors, Researchers, Bioinformaticians
Organisations involved: UM
Presentation
Presentation
Integration and interoperability (conference session)
Chris Evelo, Marvin Martens, Thomas Exner, Herve Menager, Jildau Bouwman, Alessia Bardi
23 Nov 2017
Abstract:
Besides new and improved in vitro methods, in silico plays a major role in the endeavor to reach the 3R goals of replacement, reduction and refinement in both toxicodynamics and biokinetics and especially in the interplay with the first mentioned methods in forming integrated approaches to testing and assessment (IATA) and integrated testing strategies (ITS). However, for the most efficient usage of these methods and making them available to all stakeholder, these tools need to be available and accessible not necessarily in an open (not in the sense of free of charge but of open, interpretable and reproducible science), harmonized and interoperable way. This session will present international approaches and platforms providing discovery services and repositories for predictive-toxicology and risk-assessment software solutions and related disciplines, activities to harmonize the description, access and usage of these and ways to combine them into workflows for more complex analysis and modeling task.

Publisher: OpenTox
Target audience: Researchers, Bioinformaticians, Software developers
Open access: yes
Licence: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Organisations involved: DC, UM
Presentation